Basic Information
Locus ID:
AsparagusV1_05.2555.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 105410969 | 105422276 | + | AsparagusV1_05.2555.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 54,641.13 Da | 54.65 | 83.82 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 221 | 266 | 3.4E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 206 | 1.6E-15 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 3.9E-8 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 374 | 5.01E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 274 | 9.67E-51 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 277 | 2.4E-23 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 151 | 1.8E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 381 | 2.7E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 221 | 250 | 0.006 | IPR002110 |
| SMART | SM00184 | ring_2 | 319 | 367 | 1.9E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 178 | 207 | 4.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0051 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 8.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 0.22 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 221 | 253 | 10.63275 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 178 | 203 | 11.107922 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.00994 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 178 | 210 | 11.19366 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.75132 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 368 | 10.202563 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.932349 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.01842 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 221 | 252 | 9.436445 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.728291 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_020264764.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Asparagus officinalis] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1EUF6 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F25550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology