Basic Information
Locus ID:
AsparagusV1_05.2352.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 98622127 | 98628820 | + | AsparagusV1_05.2352.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 50,191.86 Da | 46.46 | 88.20 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 157 | 355 | 1.94842E-137 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 379 | 444 | 9.8E-7 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 178 | 339 | 8.3E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 147 | 357 | 6.03E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 360 | 445 | 7.77E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 362 | 445 | 2.1E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 143 | 361 | 2.4E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 172 | 369 | 6.6E-57 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 153 | 181 | 10.920789 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 354 | 28.830566 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 365 | 445 | 10.165351 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 300 | 308 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.5 | - | 0 |
| RefSeq | XP_020264540.1 | eukaryotic initiation factor 4A-8-like [Asparagus officinalis] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EVA1 | Eukaryotic initiation factor 4A-11 OS=Asparagus officinalis OX=4686 GN=A4U43_C05F23520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology