Basic Information
Locus ID:
AsparagusV1_05.2322.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 97970425 | 97976533 | - | AsparagusV1_05.2322.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 112,951.83 Da | 38.20 | 86.35 | -0.18 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_020264489.1 | LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase 2 [Asparagus officinalis] | 0 |
| Q7XM31 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EUI3 | RNA-dependent RNA polymerase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F23220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology