Basic Information
Locus ID:
AsparagusV1_05.2221.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 94511327 | 94512559 | - | AsparagusV1_05.2221.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 43,997.06 Da | 42.83 | 92.07 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 148 | 0.066 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 172 | 208 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 318 | 8.79E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 309 | 3.5E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 75 | 110 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 208 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 248 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 23.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 153 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 217 | 9.238559 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49180.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_020266688.1 | protein ROOT INITIATION DEFECTIVE 3-like [Asparagus officinalis] | 0 |
| Q9M3B4 | Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ETT2 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F22210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag2G00042 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013610 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103720694, gene-LOC103720696, gene-LOC120111278 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2221.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13586 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538730, gene-QOZ80_6BG0491960 |
| Poaceae | Oryza coarctata | 2 | Oco17G007400, Oco18G007630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G215900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G007920 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10343, nbis-gene-30513 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11100, nbisL1-mrna-11103 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12411, nbisL1-mrna-12412, nbisL1-mrna-9616 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10654 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.34 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013812 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20369 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15323 |
| Salicaceae | Populus euphratica | 1 | populus_peu00751 |