Basic Information
Locus ID:
AsparagusV1_05.2062.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 88420966 | 88456195 | + | AsparagusV1_05.2062.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 261,753.13 Da | 40.87 | 89.63 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12234 | RAVE protein 1 C terminal | 645 | 1322 | 4.1E-77 | IPR022033 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2274 | 2306 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2062 | 2364 | 8.61E-28 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 738 | 1.97E-15 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 192 | 2.44E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1905 | 2356 | 1.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 411 | 3.0E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 590 | 795 | 1.1E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2193 | 2239 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 258 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2267 | 2306 | 5.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 163 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2327 | 2364 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 9 | 45 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 595 | 630 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2041 | 2085 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2102 | 2137 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 689 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2148 | 2188 | 60.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2274 | 2315 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2274 | 2306 | 10.732868 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1863 | 1895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1856 | 1899 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020264174.1 | uncharacterized protein LOC109840081 [Asparagus officinalis] | 0 |
| Q6PNC0 | DmX-like protein 1 OS=Mus musculus OX=10090 GN=Dmxl1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EU79 | Rav1p_C domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F20620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29472, jg29473 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23522 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022830 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3912, Sbi_jg49135 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6105 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000609 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10879, Sgl16234 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014876, gene:ENSEOMG00000035105 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0026440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005980 |
| Apiaceae | Apium graveolens | 8 | Ag6G00230, AgUnG01610, AgUnG01611, AgUnG01612, AgUnG01613 ... |
| Arecaceae | Cocos nucifera | 1 | scaffold017018G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713736 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2062.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G00244 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001279m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS02554g070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1314 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1468 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0182s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g23500, gene.Thate08g18210, gene.Thate09g08140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.679 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017990 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31423 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2003, BH02.2050, CH02.2223 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0265040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053283 |
| Poaceae | Oryza coarctata | 2 | Oco01G012480, Oco02G012610 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g37120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G163200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603024 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G017930, Chr05G016080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G348500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029450, gene_TRIDC3BG032680 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G201200.1, TraesCS3B02G224700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb356500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47370 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2136, evm.TU.LG06.180 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.616 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21599 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9620 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7415, nbisL1-mrna-7420 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.198 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017714 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1695 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5422 |
| Salicaceae | Populus euphratica | 2 | populus_peu31535, populus_peu31536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645419 |
| Solanaceae | Solanum chilense | 1 | SOLCI000592400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003069 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_716 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1995 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12540.v3.1 |