Basic Information
Locus ID:
AsparagusV1_05.1757.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 76978135 | 76978665 | - | AsparagusV1_05.1757.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 19,571.46 Da | 38.39 | 101.42 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 47 | 71 | 0.062 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 75 | 104 | 3.4E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 137 | 1.2E-15 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 75 | 108 | 0.0028 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14050.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_020254821.1 | pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Asparagus officinalis] | 0 |
| O23266 | Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H13 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1ESJ9 | Pentatricopeptide repeat-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F17570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_12G001960 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2086.V1.1, AsparagusV1_05.1757.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1818, CH04.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0404360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023140.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009601, gene-QYE76_048342 |
| Poaceae | Oryza coarctata | 1 | Oco10G002650 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G055000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr18G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017020, gene_TRIDC1BG017900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G094800.1.cds1, TraesCS1B02G122700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18170 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27717 |