Basic Information
Locus ID:
AsparagusV1_05.1674.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 73376282 | 73443207 | + | AsparagusV1_05.1674.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 127,663.44 Da | 38.81 | 77.91 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 54 | 179 | 1.93169E-36 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 196 | 524 | 1.02115E-153 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1071 | 1.9E-48 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 623 | 875 | 9.2E-70 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 519 | 5.0E-47 | IPR001394 |
| Pfam | PF00917 | MATH domain | 60 | 180 | 2.1E-18 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 545 | 9.42E-93 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 187 | 7.68E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 800 | 6.1E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 523 | 2.8E-85 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 194 | 8.7E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 1.4E-21 | - |
| SMART | SM00061 | math_3 | 55 | 159 | 1.6E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 522 | 40.489513 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 37.062256 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 438 | 455 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| Coils | Coil | Coil | 538 | 565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_020265835.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Asparagus officinalis] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ESS5 | ubiquitinyl hydrolase 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C05F16740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology