Basic Information
Locus ID:
AsparagusV1_05.1652.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 72529021 | 72545770 | + | AsparagusV1_05.1652.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 106,233.71 Da | 48.20 | 80.73 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 714 | 832 | 1.17097E-48 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 278 | 835 | 4.3E-70 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 276 | 834 | 5.49E-95 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 263 | 499 | 9.2E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 615 | 879 | 2.5E-41 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 278 | 871 | 46.869724 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 811 | 828 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 279 | 294 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 911 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_020266514.1 | ubiquitin carboxyl-terminal hydrolase 8 [Asparagus officinalis] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1ESA5 | Ubiquitin carboxyl-terminal hydrolase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F16520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology