Basic Information
Locus ID:
AsparagusV1_05.132.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2455426 | 2465675 | + | AsparagusV1_05.132.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.34 | 116,507.04 Da | 40.95 | 81.71 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 499 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 890 | 922 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 457 | 4.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 317 | 632 | 5.31E-43 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 807 | 1021 | 8.55E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 514 | 651 | 1.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 778 | 1030 | 3.5E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 236 | 513 | 7.7E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 884 | 923 | 6.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 410 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 457 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 841 | 881 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 973 | 1015 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 801 | 838 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 546 | 140.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 115 | 4.8E-8 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 310 | 349 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 500 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 589 | 0.61 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 567 | 598 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 891 | 926 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 423 | 459 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 62 | 115 | 11.455101 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 358 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 891 | 932 | 12.613797 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 444 | 458 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_020265167.1 | LOW QUALITY PROTEIN: protein TPR1-like [Asparagus officinalis] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ESN0 | Topless-related protein 3-like OS=Asparagus officinalis OX=4686 GN=A4U43_C05F1320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology