Basic Information
Locus ID:
AsparagusV1_05.1265.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 51993561 | 52014396 | - | AsparagusV1_05.1265.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 82,655.05 Da | 45.22 | 90.13 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 338 | 8.95972E-175 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 355 | 655 | 5.12711E-159 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 44 | 333 | 7.1E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 651 | 4.2E-38 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 655 | 7.06E-47 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 338 | 2.2E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 656 | 9.0E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 338 | 3.2E-33 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 656 | 41.125935 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 339 | 27.67905 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_020267746.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Asparagus officinalis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ERE1 | glycerophosphodiester phosphodiesterase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F12650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology