Basic Information
Locus ID:
AsparagusV1_05.1186.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 46779774 | 46780822 | + | AsparagusV1_05.1186.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 13,108.38 Da | 18.10 | 104.75 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 20 | 120 | 1.2E-25 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 120 | 5.74E-33 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 13 | 120 | 1.1E-31 | - |
| SMART | SM00220 | serkin_6 | 2 | 120 | 0.001 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 120 | 23.594606 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 70 | 82 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50000.2 | - | 0 |
| RefSeq | XP_020266322.1 | chitin elicitor receptor kinase 1-like [Asparagus officinalis] | 0 |
| Q9FGB1 | Serine/threonine-protein kinase 52 OS=Arabidopsis thaliana OX=3702 GN=CBC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FWR4 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F32890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1186.V1.1 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G520100, Tel2E01G744300, Tel4E01G265300 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG038860, gene_TRIDC5AG059480 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28877 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15293 |