Basic Information
Locus ID:
AsparagusV1_05.1093.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 41369586 | 41384421 | - | AsparagusV1_05.1093.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 41,419.96 Da | 36.18 | 89.64 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 271 | 338 | 3.6E-6 | IPR001245 |
| Pfam | PF02867 | Ribonucleotide reductase, barrel domain | 98 | 277 | 7.4E-30 | IPR000788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 273 | 341 | 8.59E-9 | IPR011009 |
| SUPERFAMILY | SSF51998 | PFL-like glycyl radical enzymes | 116 | 277 | 2.66E-31 | - |
| Gene3D | G3DSA:1.10.1650.20 | - | 133 | 182 | 1.4E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 256 | 356 | 2.0E-10 | - |
| Gene3D | G3DSA:3.20.70.20 | - | 115 | 246 | 1.4E-25 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00230 (Purine metabolism)
map00230 (Purine metabolism)
ko00240 (Pyrimidine metabolism)
map00240 (Pyrimidine metabolism)
ko00480 (Glutathione metabolism)
map00480 (Glutathione metabolism)
ko00983 (Drug metabolism - other enzymes)
map00983 (Drug metabolism - other enzymes)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
Reaction:
R02017 (dADP + Thioredoxin disulfide + H2O <=> Thioredoxin + ADP)
R02019 (dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin)
R02024 (dCDP + Thioredoxin disulfide + H2O <=> Thioredoxin + CDP)
R08363 (2'-Deoxyribonucleoside diphosphate + Tryparedoxin disulfide + H2O <=> Ribonucleoside diphosphate + Tryparedoxin)
R08364 (2'-Deoxyribonucleoside diphosphate + Trypanothione disulfide + H2O <=> Ribonucleoside diphosphate + Trypanothione)
R11893 (5-Fluorodeoxyuridine diphosphate + Thioredoxin disulfide + H2O <=> 5-Fluorouridine diphosphate + Thioredoxin)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21790.1 | ribonucleotide reductase 1. encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair | 0 |
| RefSeq | XP_020260064.1 | LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase large subunit-like [Asparagus officinalis] | 0 |
| Q9SJ20 | Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=3702 GN=RNR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EV65 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F10930 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg34514, jg34515, jg9593, jg9594 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18017, gene_18167 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000780, Ah001193, Ah017137, Ah024861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g150910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12012, Sbi_jg24049, Sbi_jg24050, Sbi_jg46940 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12147, Seu_jg21231 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002639, GOSA_00009569 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35014, Sgl40407, Sgl80421, Sgl82882 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005862, gene:ENSEOMG00000025131 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30228600 |
| Apiaceae | Apium graveolens | 1 | Ag8G02309 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716145 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_02.1386.V1.1, AsparagusV1_04.1459.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G03769 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67370.1, AT4G32200.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1072 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g03200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0219s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g24690, gene.Thate01g25600, gene.Thate08g06150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.765 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00002076, Pov_00011472, Pov_00012073, Pov_00013527 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34320 |
| Poaceae | Echinochloa crus-galli | 10 | AH03.2515, AH05.1522, BH02.1837, BH03.2206, BH03.2658 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1BG0083320, gene-QOZ80_3AG0217020 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0494140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023176 |
| Poaceae | Oryza coarctata | 2 | Oco14G006360, Oco18G008960 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g07170.1, LOC_Os03g10570.1, LOC_Os09g20800.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G234400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0701440, Pt_Chr0701491, Pt_Chr0702733 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G001020, Chr10G015140, Chr11G007140, Chr14G016700 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G306700, Tel5E01G457700, Tel5E01G751600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG046830 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G286500.1, TraesCS5A02G304300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb102420_P005, Zm00001eb247260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10362 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1325, evm.TU.LG12.376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.120, evm.TU.Scaffold_8_RagTag.1603 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23234, nbisL1-mrna-27054, nbisL1-mrna-27240 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11364, nbisL1-mrna-9335 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14635 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.481, evm.TU.utg000013l.72 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006420 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4981, nbisL1-mrna-6979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13901 |
| Salicaceae | Populus euphratica | 2 | populus_peu04007, populus_peu34847 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641278 |
| Solanaceae | Solanum chilense | 1 | SOLCI006592900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017837 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3358 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0420 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36440.v3.1 |