Basic Information
Locus ID:
AsparagusV1_05.1074.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 40488758 | 40507011 | - | AsparagusV1_05.1074.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 31,582.20 Da | 37.53 | 75.14 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 43 | 127 | 2.58656E-45 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 220 | 272 | 2.10551E-9 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 44 | 127 | 5.1E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 201 | 270 | 1.7E-8 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 137 | 3.66E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 24 | 143 | 1.0E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 199 | 278 | 1.2E-7 | IPR036910 |
| SMART | SM00501 | bright_3 | 41 | 132 | 2.0E-25 | IPR001606 |
| SMART | SM01014 | ARID_2 | 37 | 127 | 1.4E-26 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 40 | 131 | 24.665058 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020267700.1 | high mobility group B protein 15-like [Asparagus officinalis] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EQT2 | ARID domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F10740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology