Basic Information
Locus ID:
AsparagusV1_04.934.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
protein At1g32220, chloroplastic-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 23402080 | 23403954 | + | AsparagusV1_04.934.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 8,855.94 Da | 31.19 | 100.85 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 74 | 1.0E-6 | IPR013210 |
| Pfam | PF01370 | NAD dependent epimerase/dehydratase family | 10 | 39 | 2.5E-5 | IPR001509 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 40 | 2.8E-8 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 8 | 66 | 1.9E-8 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10730.1 | NAD(P)-binding Rossmann-fold superfamily protein. | 0 |
| RefSeq | XP_020255726.1 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Asparagus officinalis] | 0 |
| Q6K4T4 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1EZI7 | Epimerase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F9340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31112 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.2897.V1.1, AsparagusV1_04.934.V1.1 ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2321 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1692, Cgl05G2457, Cgl05G2491 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.1045 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0109500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0006820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066036 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17336 |