Basic Information
Locus ID:
AsparagusV1_04.926.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 23150223 | 23162740 | - | AsparagusV1_04.926.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 34,413.02 Da | 54.01 | 71.93 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 172 | 300 | 7.41855E-64 | - |
| CDD | cd16571 | RING-HC_SIAHs | 56 | 94 | 3.97011E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 100 | 299 | 6.0E-81 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 111 | 303 | 2.22E-47 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 98 | 1.03E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 299 | 5.9E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 164 | 8.6E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 110 | 7.0E-8 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 111 | 171 | 14.01486 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 58 | 94 | 9.582937 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_020260579.1 | E3 ubiquitin-protein ligase SINAT2-like [Asparagus officinalis] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F263 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F9260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology