Basic Information
Locus ID:
AsparagusV1_04.868.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 21378403 | 21378894 | + | AsparagusV1_04.868.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 18,876.62 Da | 70.91 | 88.47 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 107 | 151 | 5.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 156 | 6.56E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 155 | 7.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 150 | 3.1E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 107 | 151 | 0.0093 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 151 | 12.784338 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05280.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039134265.1 | RING-H2 finger protein ATL74-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9FLC6 | RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F3U0 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F8680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 4 | COCNU_07G002090, COCNU_09G004210, COCNU_10G001500 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706422 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09710 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0110s00028.v1.0, Dusal.0930s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g15870, gene.Thate08g15890 |
| Poaceae | Echinochloa crus-galli | 1 | AH03.2740 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0528150, gene-QOZ80_6BG0482140 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0499860.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007420, gene-QYE76_007421 |
| Poaceae | Oryza coarctata | 1 | Oco17G010440 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g36500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G255800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700057, Pt_Chr0700062 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G014190, Chr11G008080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G519600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG048290, gene_TRIDC5BG052220 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G326800.1.cds1, TraesCS5A02G326900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb319810_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35250 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32193 |