Basic Information
Locus ID:
AsparagusV1_04.850.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 20877996 | 20886735 | - | AsparagusV1_04.850.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 51,376.96 Da | 46.73 | 74.58 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 209 | 250 | 4.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 205 | 260 | 3.66E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 193 | 284 | 1.1E-5 | - |
| SMART | SM00256 | fbox_2 | 213 | 253 | 8.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 207 | 253 | 9.25902 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 198 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_020260524.1 | putative F-box protein At5g15660 [Asparagus officinalis] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F453 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F8500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.850.V1.1 |
| Asteraceae | Flaveria trinervia | 25 | Ftri10G02265, Ftri10G33221, Ftri11G12082, Ftri11G33565 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020523 |