Basic Information
Locus ID:
AsparagusV1_04.767.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 19211750 | 19212505 | - | AsparagusV1_04.767.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 28,464.52 Da | 67.02 | 64.82 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 42 | 89 | 9.13488E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 44 | 87 | 3.5E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 100 | 2.7E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 101 | 2.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 87 | 1.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 88 | 12.946621 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 59 | 68 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 160 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_020260440.1 | E3 ubiquitin-protein ligase RMA3-like [Asparagus officinalis] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F1R9 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F7670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology