Basic Information
Locus ID:
AsparagusV1_04.746.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 18810481 | 18811557 | - | AsparagusV1_04.746.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 39,412.04 Da | 43.97 | 110.87 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 7.08012E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 3.1E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 103 | 336 | 1.82E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 82 | 1.92E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 3.7E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 358 | 2.2E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 7.6E-33 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 265 | 309 | 9.3974 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 44.336414 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_020262333.1 | E3 ubiquitin-protein ligase PUB23-like [Asparagus officinalis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F3H3 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F7460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology