Basic Information
Locus ID:
AsparagusV1_04.698.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Seven in absentia protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17764725 | 17767954 | - | AsparagusV1_04.698.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 36,145.06 Da | 47.67 | 68.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 69 | 107 | 1.69009E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 113 | 312 | 5.0E-75 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 124 | 316 | 1.63E-41 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 112 | 3.03E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 196 | 312 | 3.2E-33 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 123 | 4.5E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 179 | 6.5E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 124 | 184 | 15.158228 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 107 | 10.069786 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_020260373.1 | E3 ubiquitin-protein ligase SINAT5-like [Asparagus officinalis] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F0P5 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F6980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000080 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.698.V1.1, AsparagusV1_06.763.V1.1 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09170 |