Basic Information
Locus ID:
AsparagusV1_04.674.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17251722 | 17255175 | + | AsparagusV1_04.674.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 52,670.57 Da | 53.94 | 73.07 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12203 | GT1 | 189 | 255 | 3.13337E-18 | - |
| Pfam | PF00069 | Protein kinase domain | 8 | 139 | 4.9E-25 | IPR000719 |
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 189 | 276 | 1.2E-18 | IPR044822 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 139 | 7.01E-40 | IPR011009 |
| Gene3D | G3DSA:1.10.10.60 | - | 190 | 253 | 3.6E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 142 | 9.3E-43 | - |
| SMART | SM00220 | serkin_6 | 3 | 350 | 3.7E-6 | IPR000719 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 182 | 248 | 6.608863 | IPR001005 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 270 | 20.329651 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 90 | 102 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 315 | - | - |
| Coils | Coil | Coil | 438 | 453 | - | - |
| Coils | Coil | Coil | 346 | 366 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 0 |
| RefSeq | XP_020260350.1 | trihelix transcription factor PTL-like [Asparagus officinalis] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F393 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F6740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology