Basic Information
Locus ID:
AsparagusV1_04.637.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 16253138 | 16267855 | - | AsparagusV1_04.637.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 52,225.98 Da | 46.53 | 80.87 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 247 | 418 | 1.5E-13 | IPR000719 |
| Pfam | PF00646 | F-box domain | 130 | 166 | 5.7E-5 | IPR001810 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 215 | 423 | 6.88E-29 | IPR011009 |
| SUPERFAMILY | SSF81383 | F-box domain | 127 | 182 | 3.53E-12 | IPR036047 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 231 | 442 | 7.2E-36 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 124 | 174 | 1.5E-5 | - |
| SMART | SM00256 | fbox_2 | 134 | 173 | 0.0052 | IPR001810 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 140 | 424 | 14.449908 | IPR000719 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 128 | 174 | 8.570165 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31250.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_020262295.1 | probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Asparagus officinalis] | 0 |
| C0LGR9 | Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana OX=3702 GN=At4g31250 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F455 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F6370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology