Basic Information
Locus ID:
AsparagusV1_04.410.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10172326 | 10175118 | + | AsparagusV1_04.410.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 45,670.33 Da | 42.07 | 86.88 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 128 | 169 | 5.83949E-21 | - |
| Pfam | PF04564 | U-box domain | 124 | 173 | 2.5E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 183 | 366 | 4.61E-5 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 174 | 3.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 178 | 3.7E-21 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 127 | 189 | 8.4E-17 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 123 | 210 | 22.036406 | IPR003613 |
| Coils | Coil | Coil | 258 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_020263859.1 | putative E3 ubiquitin-protein ligase LIN-1 [Asparagus officinalis] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F331 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F4100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35519, jg35520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30054080 |
| Apiaceae | Apium graveolens | 1 | Ag9G01406 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.409.V1.1, AsparagusV1_04.410.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G23193 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2151 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2242 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.484 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015076 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2074, BH09.2229, CH09.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306240, gene-QOZ80_4BG0337220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0196090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045812 |
| Poaceae | Oryza coarctata | 1 | Oco07G014120 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G199400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301611, Pt_Chr0306600 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G005580, Chr25G004660, Chr26G013970, Chr30G004520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G773400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065120, gene_TRIDC2BG069510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G456200.2, TraesCS2B02G478300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb054320_P001, Zm00001eb072830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22666, nbis-gene-5664 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20309, Zma_g21852 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1715, evm.TU.Scaffold_8_RagTag.68 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10286, nbisL1-mrna-19809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22638 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.17, add.evm.TU.utg000002l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011815 |
| Salicaceae | Populus euphratica | 2 | populus_peu04395, populus_peu35220 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626006 |
| Solanaceae | Solanum chilense | 1 | SOLCI006667300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026658 |