Basic Information
Locus ID:
AsparagusV1_04.3328.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 137682260 | 137698789 | + | AsparagusV1_04.3328.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 105,679.65 Da | 54.23 | 78.50 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 244 | 354 | 5.6E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 838 | 901 | 4.1E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 380 | 1.98E-17 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 703 | 769 | 2.65E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 834 | 910 | 2.32E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 836 | 907 | 4.0E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 125 | 386 | 1.6E-24 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 701 | 780 | 2.1E-8 | - |
| SMART | SM00577 | forpap2 | 189 | 363 | 1.9E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 704 | 769 | 1.4E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 836 | 904 | 1.1E-4 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 835 | 905 | 12.038208 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 128 | 376 | 15.08723 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 703 | 770 | 11.188538 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 541 | - | - |
| Coils | Coil | Coil | 893 | 913 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_020263556.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Asparagus officinalis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F5E2 | protein-serine/threonine phosphatase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F33280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology