Basic Information
Locus ID:
AsparagusV1_04.3207.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
citrate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 133936226 | 133949345 | - | AsparagusV1_04.3207.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 32,542.25 Da | 38.41 | 86.40 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48256 | Citrate synthase | 22 | 124 | 2.2E-8 | IPR036969 |
| Gene3D | G3DSA:1.10.580.10 | Citrate Synthase, domain 1 | 24 | 93 | 3.9E-13 | IPR016142 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 300 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01210 (2-Oxocarboxylic acid metabolism)
map01210 (2-Oxocarboxylic acid metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44350.1 | Citrate synthase family protein. encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. | 0 |
| RefSeq | XP_020263263.1 | citrate synthase 4, mitochondrial-like isoform X2 [Asparagus officinalis] | 0 |
| P20115 | Citrate synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CSY4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1F530 | Similar to OS=Asparagus officinalis OX=4686 GN=A4U43_C04F32070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology