Basic Information
Locus ID:
AsparagusV1_04.313.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7299902 | 7303365 | + | AsparagusV1_04.313.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 32,184.63 Da | 50.80 | 61.18 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 160 | 200 | 2.0E-7 | IPR027370 |
| Pfam | PF14599 | Zinc-ribbon | 207 | 265 | 9.3E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 25 | 105 | 5.3E-15 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 20 | 91 | 9.15E-13 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 96 | 153 | 1.06E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 208 | 7.42E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 231 | 273 | 4.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 205 | 6.2E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 160 | 202 | 5.1E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 18 | 97 | 23.937639 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 203 | 11.943417 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 95 | 159 | 35.021793 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_020259997.1 | E3 ubiquitin-protein ligase MIEL1-like [Asparagus officinalis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EXW7 | RING finger and CHY zinc finger domain-containing protein 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C04F3130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology