Basic Information
Locus ID:
AsparagusV1_04.3127.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 131154610 | 131204553 | + | AsparagusV1_04.3127.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 379,167.38 Da | 44.77 | 89.57 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1354 | 1501 | 6.5E-11 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1124 | 1284 | 1.2E-11 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 2466 | 2635 | 2.0E-8 | IPR009543 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 1983 | 2112 | 3.3E-7 | IPR010482 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2698 | 2717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1322 | 1339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1319 | 1343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2702 | 2717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1985 | 2008 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_020262836.1 | uncharacterized protein LOC109838824 [Asparagus officinalis] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F4W2 | SH2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F31270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology