Basic Information
Locus ID:
AsparagusV1_04.3126.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 131103510 | 131154541 | + | AsparagusV1_04.3126.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 101,121.87 Da | 40.24 | 89.92 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 373 | 9.2E-67 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 4.5E-30 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 778 | 7.3E-31 | IPR031642 |
| SUPERFAMILY | SSF50729 | PH domain-like | 793 | 874 | 8.43E-7 | - |
| Coils | Coil | Coil | 104 | 131 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.1 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_020262836.1 | uncharacterized protein LOC109838824 [Asparagus officinalis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F4W7 | PH domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F31260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology