Basic Information
Locus ID:
AsparagusV1_04.3090.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Dual specificity protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 129486574 | 129509899 | + | AsparagusV1_04.3090.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 120,550.71 Da | 56.06 | 69.44 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 457 | 703 | 1.39105E-120 | - |
| CDD | cd00130 | PAS | 75 | 170 | 1.34886E-11 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 452 | 701 | 7.9E-65 | IPR001245 |
| Pfam | PF00989 | PAS fold | 62 | 165 | 3.0E-10 | IPR013767 |
| Pfam | PF13178 | Protein of unknown function (DUF4005) | 960 | 1030 | 3.2E-10 | IPR025064 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 439 | 700 | 1.07E-78 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 62 | 170 | 3.49E-17 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 75 | 172 | 6.7E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 530 | 710 | 1.9E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 444 | 528 | 1.2E-25 | - |
| SMART | SM00091 | pas_2 | 60 | 128 | 1.6E-7 | IPR000014 |
| SMART | SM00220 | serkin_6 | 451 | 707 | 3.8E-55 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 62 | 167 | 9.3E-12 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 81 | 130 | 14.159442 | IPR000014 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 747 | 774 | 8.2423 | IPR000048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 451 | 707 | 41.813332 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 457 | 478 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 570 | 582 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 630 | 652 | 2.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 564 | 582 | 2.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 525 | 538 | 2.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 611 | 621 | 2.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 674 | 696 | 2.0E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1033 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 848 | - | - |
| Coils | Coil | Coil | 32 | 52 | - | - |
| Coils | Coil | Coil | 1073 | 1074 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23050.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_020262573.1 | RAF proto-oncogene serine/threonine-protein kinase isoform X2 [Asparagus officinalis] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F5J3 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F30900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology