Basic Information
Locus ID:
AsparagusV1_04.2990.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 126134608 | 126159045 | + | AsparagusV1_04.2990.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 54,861.77 Da | 39.38 | 89.82 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 412 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 373 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 208 | 501 | 2.2E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 192 | 295 | 1.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 297 | 508 | 1.1E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 417 | 460 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 373 | 0.092 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 6.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 329 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 413 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 500 | 9.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 252 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 343 | 376 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 343 | 382 | 11.64467 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 360 | 374 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 239 | 253 | 5.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 360 | 374 | 5.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 400 | 414 | 5.7E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_020687963.1 | zinc finger CCCH domain-containing protein 17 [Dendrobium catenatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F7F2 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F29900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology