Basic Information
Locus ID:
AsparagusV1_04.2986.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 125997700 | 125999430 | + | AsparagusV1_04.2986.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 50,259.44 Da | 34.19 | 83.25 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 352 | 4.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 164 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 313 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 129 | 445 | 4.0E-42 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 298 | 452 | 2.4E-25 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 13 | 67 | 3.9E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 177 | 2.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 178 | 297 | 2.4E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 276 | 313 | 0.0033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 269 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 440 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 353 | 3.6E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 93 | 120 | 1.1 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 29 | 52 | 0.071 | IPR000571 |
| SMART | SM00320 | WD40_4 | 125 | 164 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 178 | 196 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 11.694689 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 322 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 323 | 362 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 132 | 164 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 132 | 173 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 93 | 121 | 9.028184 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 352 | 8.887423 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 316 | 9.256512 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 300 | 314 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 340 | 354 | 3.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 151 | 165 | 3.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 300 | 314 | 3.7E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 87 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_020262147.1 | zinc finger CCCH domain-containing protein 17-like [Asparagus officinalis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F5D9 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F29860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology