Basic Information
Locus ID:
AsparagusV1_04.2846.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 116677656 | 116685547 | + | AsparagusV1_04.2846.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 46,612.75 Da | 66.69 | 83.59 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 231 | 274 | 1.50631E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 20 | 161 | 5.99579E-51 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 231 | 274 | 1.2E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 62 | 140 | 5.7E-11 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 288 | 5.98E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 142 | 4.84E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 279 | 6.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 154 | 2.5E-27 | - |
| SMART | SM00184 | ring_2 | 232 | 273 | 3.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 274 | 12.282736 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_020262015.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Asparagus officinalis] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F631 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F28460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology