Basic Information
Locus ID:
AsparagusV1_04.245.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5565532 | 5578012 | + | AsparagusV1_04.245.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 168,860.00 Da | 41.22 | 106.83 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 1.03299E-105 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 623 | 823 | 1.7476E-104 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 946 | 1240 | 2.59982E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1263 | 1483 | 3.36619E-114 | - |
| Pfam | PF00005 | ABC transporter | 1282 | 1430 | 1.2E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 311 | 577 | 2.0E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 643 | 775 | 2.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 949 | 1188 | 1.1E-26 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1257 | 1495 | 7.17E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 845 | 2.71E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 298 | 605 | 2.22E-38 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 945 | 1245 | 8.89E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 906 | 1246 | 8.5E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1248 | 1500 | 7.5E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 851 | 2.9E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 281 | 606 | 9.8E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 650 | 831 | 1.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1291 | 1483 | 9.0E-15 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 625 | 846 | 23.469492 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 948 | 1218 | 35.253857 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1265 | 1499 | 18.114042 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 589 | 37.240822 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 748 | 762 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 920 | - | - |
| Coils | Coil | Coil | 904 | 924 | - | - |
| Coils | Coil | Coil | 470 | 490 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_020259929.1 | ABC transporter C family member 5-like [Asparagus officinalis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F0D7 | ABC transporter C family member 15 OS=Asparagus officinalis OX=4686 GN=A4U43_C04F2450 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology