Basic Information
Locus ID:
AsparagusV1_04.2426.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 90124933 | 90139380 | - | AsparagusV1_04.2426.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 18,261.95 Da | 57.81 | 74.91 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 8 | 50 | 3.2E-9 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 3 | 60 | 4.84E-11 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 1 | 77 | 1.9E-30 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 1 | 76 | 21.196732 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 151 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_020251867.1 | AMSH-like ubiquitin thioesterase 1 isoform X2 [Asparagus officinalis] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F8N2 | MPN domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=A4U43_C04F24260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg10794, Sbi_jg16797, Sbi_jg20202, Sbi_jg22537 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2426.V1.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29011, nbis-gene-51055 |