Basic Information
Locus ID:
AsparagusV1_04.2361.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 86118239 | 86135481 | - | AsparagusV1_04.2361.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 55,963.25 Da | 43.39 | 74.41 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 426 | 490 | 1.05154E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 56 | 141 | 1.08498E-47 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 426 | 493 | 3.1E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 59 | 141 | 3.8E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 47 | 153 | 5.89E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 423 | 496 | 4.45E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 46 | 152 | 7.5E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 409 | 500 | 9.2E-18 | IPR036910 |
| SMART | SM00398 | hmgende2 | 425 | 494 | 1.3E-11 | IPR009071 |
| SMART | SM00501 | bright_3 | 55 | 146 | 2.1E-27 | IPR001606 |
| SMART | SM01014 | ARID_2 | 51 | 141 | 8.7E-26 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 426 | 493 | 15.341127 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 54 | 145 | 25.034277 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 195 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020261763.1 | high mobility group B protein 9-like isoform X2 [Asparagus officinalis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F3V1 | ARID domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F23610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology