Basic Information
Locus ID:
AsparagusV1_04.2241.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 77321692 | 77345791 | - | AsparagusV1_04.2241.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 53,853.16 Da | 28.87 | 105.17 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 363 | 3.09217E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 1.6E-18 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 358 | 2.2E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 390 | 1.03E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 257 | 417 | 9.7E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 362 | 9.6E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.232578 | IPR031468 |
| ProSiteProfiles | PS50890 | PUA domain profile. | 365 | 389 | 8.565045 | - |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 365 | 20.953514 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 3.6E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 3.6E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 3.6E-6 | IPR000008 |
| Coils | Coil | Coil | 391 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_020261703.1 | synaptotagmin-5-like isoform X1 [Asparagus officinalis] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F2Y4 | Synaptotagmin-5 OS=Asparagus officinalis OX=4686 GN=A4U43_C04F22410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology