Basic Information
Locus ID:
AsparagusV1_04.2197.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 75240858 | 75246826 | + | AsparagusV1_04.2197.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 52,230.83 Da | 39.45 | 93.55 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 81 | 348 | 5.047E-94 | - |
| Pfam | PF00069 | Protein kinase domain | 77 | 344 | 5.8E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 346 | 6.88E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 151 | 367 | 9.9E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 38 | 150 | 3.0E-31 | - |
| SMART | SM00220 | serkin_6 | 75 | 354 | 8.6E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 75 | 350 | 37.007771 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 81 | 104 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 195 | 207 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30570.1 | hercules receptor kinase 2. Encodes HERCULES2 (HERK2), a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth. | 0 |
| RefSeq | XP_020262964.1 | probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Asparagus officinalis] | 0 |
| Q9SA72 | Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana OX=3702 GN=At1g30570 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1F848 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F21970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30211530 |
| Apiaceae | Apium graveolens | 1 | Ag7G02425 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G015190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708723 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2197.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G01419 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0118 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001039 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.65 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16983 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13644 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11680 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1318 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15692 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2967 |
| Salicaceae | Populus euphratica | 1 | populus_peu14081 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623240 |
| Solanaceae | Solanum chilense | 1 | SOLCI002961600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011150 |