Basic Information
Locus ID:
AsparagusV1_04.2152.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 72499015 | 72501039 | - | AsparagusV1_04.2152.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 19,005.91 Da | 36.32 | 84.29 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 119 | 163 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 166 | 2.78E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 169 | 4.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 162 | 1.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 163 | 12.459772 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_020261655.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Asparagus officinalis] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F3A5 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F21520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology