Basic Information
Locus ID:
AsparagusV1_04.2142.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 72321523 | 72343329 | - | AsparagusV1_04.2142.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 107,075.41 Da | 40.22 | 78.79 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 867 | 948 | 3.1E-7 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 573 | 783 | 9.8E-48 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 96 | 319 | 1.5E-59 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 324 | 415 | 1.2E-19 | IPR015341 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 35 | 320 | 1.7E-71 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 421 | 951 | 1.0E-137 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 323 | 418 | 1.67E-27 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 569 | 833 | 2.2E-100 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 442 | 568 | 4.7E-27 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 91 | 287 | 1.6E-74 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 288 | 366 | 6.9E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 893 | 951 | 5.5E-13 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 857 | 892 | 2.7E-7 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 367 | 423 | 1.7E-20 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 324 | 398 | 2.8E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_020261644.1 | LOW QUALITY PROTEIN: alpha-mannosidase [Asparagus officinalis] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F395 | Alpha-mannosidase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F21420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology