Basic Information
Locus ID:
AsparagusV1_04.2108.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 70811328 | 70815743 | + | AsparagusV1_04.2108.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 35,101.56 Da | 44.28 | 72.40 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 153 | 207 | 8.8E-6 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 309 | - | - |
| Coils | Coil | Coil | 293 | 313 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_020244695.1 | nuclear poly(A) polymerase 4-like [Asparagus officinalis] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F7A0 | V-type proton ATPase proteolipid subunit OS=Asparagus officinalis OX=4686 GN=A4U43_C04F21080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology