Basic Information
Locus ID:
AsparagusV1_04.2011.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 66971039 | 66972838 | + | AsparagusV1_04.2011.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 29,666.75 Da | 52.75 | 66.48 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 267 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39810.2 | - | 0 |
| RefSeq | XP_020262867.1 | uncharacterized protein LOC109838848 [Asparagus officinalis] | 0 |
| Q84JU6 | E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana OX=3702 GN=HOS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F2X3 | Expressed conserved protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F20110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004065 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24203, Sbi_jg8037 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11999 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003196 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73023, Sgl76563 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004249, gene:ENSEOMG00000020119 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004210, CQ.Regalona.r1.5BG0004560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142240 |
| Apiaceae | Apium graveolens | 1 | Ag10G02692 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017370 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708293, gene-LOC120104089 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2010.V1.1, AsparagusV1_04.2011.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G02417 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016197m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g22100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005420.2N, BniB06g005020.2N, BniB08g025610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0728 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0828 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0374s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11327 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1166 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004162 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08418, Lb2G08419 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3250, BH01.818, CH01.814 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0217130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062103 |
| Poaceae | Oryza coarctata | 2 | Oco05G022970, Oco06G023800 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G088500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107062, Pt_Chr0107540 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005840, Chr04G028200, Chr07G027070, Chr12G031520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G110300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG038870, gene_TRIDC4BG010430 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G247200.1, TraesCS4B02G067700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb047720_P001, Zm00001eb056470_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15005, nbis-gene-16082 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2839, Zma_g524 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.889, evm.TU.LG17.882 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.355, evm.TU.Scaffold_16_RagTag.356 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22608 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20174 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014274 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3419 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6517 |
| Salicaceae | Populus euphratica | 2 | populus_peu03031, populus_peu33909 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635143 |
| Solanaceae | Solanum chilense | 1 | SOLCI002552800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028592 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14075 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3834 |
| Zosteraceae | Zostera marina | 1 | Zosma02g20310.v3.1 |