Basic Information
Locus ID:
AsparagusV1_04.1992.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-H2 finger protein ATL71
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 66222876 | 66223565 | + | AsparagusV1_04.1992.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 26,134.26 Da | 46.72 | 82.62 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 187 | 228 | 1.89696E-15 | - |
| Pfam | PF13639 | Ring finger domain | 187 | 228 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 229 | 1.87E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 229 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.622055 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18930.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044485573.1 | ERAD-associated E3 ubiquitin-protein ligase HRD1A-like [Mangifera indica] | 0 |
| Q67YI6 | RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F2B4 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F19920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_02G014780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112090 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1992.V1.1 |