Basic Information
Locus ID:
AsparagusV1_04.1972.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 65444340 | 65477289 | + | AsparagusV1_04.1972.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 66,794.64 Da | 54.66 | 62.62 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 129 | 179 | 1.88273E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 277 | 325 | 6.4E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 198 | 260 | 4.2E-12 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 558 | 582 | 3.26E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 267 | 3.67E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 327 | 7.77E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 211 | 5.89E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 213 | 9.2E-20 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 256 | 515 | 8.8E-84 | - |
| SMART | SM00647 | ibrneu5 | 264 | 334 | 0.027 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 198 | 260 | 2.8E-17 | IPR002867 |
| SMART | SM00547 | zf_4 | 559 | 583 | 0.0069 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 125 | 338 | 48.762184 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 175 | 9.509172 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 555 | 584 | 8.04985 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 561 | 580 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 540 | - | - |
| Coils | Coil | Coil | 339 | 359 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_020261505.1 | probable E3 ubiquitin-protein ligase ARI8 [Asparagus officinalis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F295 | RBR-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F19720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology