Basic Information
Locus ID:
AsparagusV1_04.1944.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 64146384 | 64162547 | + | AsparagusV1_04.1944.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 45,307.07 Da | 40.85 | 92.15 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 60 | 323 | 1.5E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 60 | 322 | 1.17E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 324 | 379 | 1.83E-8 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 393 | 9.0E-111 | IPR027417 |
| SMART | SM00382 | AAA_5 | 110 | 283 | 3.5E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 57 | 378 | 2.8E-137 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 256 | 327 | 26.548809 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 88 | 247 | 39.04916 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 268 | 276 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 180 | 209 | 5.0E-77 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 351 | 368 | 5.0E-77 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 146 | 175 | 5.0E-77 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 265 | 293 | 5.0E-77 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 298 | 327 | 5.0E-77 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 218 | 247 | 5.0E-77 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 57 | 383 | 43.550022 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 55 | - | - |
| Coils | Coil | Coil | 358 | 378 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_020261495.1 | DNA repair protein recA homolog 3, mitochondrial [Asparagus officinalis] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F6U3 | DNA repair protein recA homolog 3, mitochondrial OS=Asparagus officinalis OX=4686 GN=A4U43_C04F19440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology