Basic Information
Locus ID:
AsparagusV1_04.1872.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 60890387 | 60892692 | - | AsparagusV1_04.1872.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 27,421.84 Da | 25.04 | 101.35 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 173 | 211 | 5.7301E-5 | - |
| CDD | cd00030 | C2 | 37 | 111 | 4.27087E-19 | - |
| Pfam | PF00168 | C2 domain | 171 | 210 | 2.3E-5 | IPR000008 |
| Pfam | PF00168 | C2 domain | 35 | 109 | 4.1E-17 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 163 | 210 | 2.81E-8 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 32 | 110 | 2.08E-22 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 141 | 222 | 8.6E-8 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 32 | 136 | 2.6E-20 | IPR035892 |
| SMART | SM00239 | C2_3c | 36 | 134 | 1.4E-13 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 16 | 135 | 15.208239 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 52 | 64 | 6.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 79 | 92 | 6.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 101 | 109 | 6.4E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 231 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_020271652.1 | synaptotagmin-4-like [Asparagus officinalis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1F6S4 | C2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F18720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology