Basic Information
Locus ID:
AsparagusV1_04.1697.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 51974900 | 51980395 | + | AsparagusV1_04.1697.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 45,740.66 Da | 75.14 | 68.18 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 211 | 254 | 7.20155E-18 | - |
| Pfam | PF13639 | Ring finger domain | 211 | 254 | 2.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 260 | 4.04E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 261 | 7.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 212 | 253 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 212 | 254 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 289 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020262712.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Os04g0590900-like [Asparagus officinalis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1F655 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C04F16970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology