Basic Information
Locus ID:
AsparagusV1_04.166.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4085964 | 4105072 | + | AsparagusV1_04.166.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 83,251.15 Da | 48.04 | 68.63 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 493 | 768 | 9.59723E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 570 | 606 | 4.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 652 | 686 | 2.0E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.5E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 521 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 532 | 563 | 7.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 733 | 768 | 0.0037 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 494 | 768 | 3.36E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 620 | 768 | 7.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 619 | 5.8E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 689 | 728 | 6.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 648 | 686 | 8.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 563 | 1.7E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 2.1E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 730 | 768 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 606 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 521 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 645 | 210.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.819345 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 574 | 608 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 574 | 615 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 531 | 563 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 737 | 768 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 737 | 768 | 11.049229 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 489 | 522 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 489 | 530 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 531 | 563 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 655 | 695 | 10.842632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 508 | 522 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 755 | 768 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 550 | 564 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 508 | 522 | 1.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 399 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_020259883.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Asparagus officinalis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F1Y4 | LisH domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F1660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology