Basic Information
Locus ID:
AsparagusV1_04.157.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Splicing factor U2AF
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3921384 | 3933260 | + | AsparagusV1_04.157.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 129,912.11 Da | 51.90 | 52.63 | -1.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 781 | 848 | 3.6E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 882 | 1141 | 1.79E-6 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 666 | 856 | 5.53E-19 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 880 | 971 | 3.1E-11 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 775 | 828 | 1.6E-30 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 668 | 848 | 1.6E-30 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 985 | 1150 | 7.0E-6 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 669 | 747 | 0.0017 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 780 | 851 | 3.7E-5 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 886 | 1137 | 2.1 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 779 | 855 | 8.72287 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 668 | 751 | 9.54153 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 933 | 963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1041 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1041 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 537 | - | - |
| Coils | Coil | Coil | 64 | 98 | - | - |
| Coils | Coil | Coil | 358 | 378 | - | - |
| Coils | Coil | Coil | 445 | 465 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33435.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_020259876.1 | uncharacterized protein LOC109836399 [Asparagus officinalis] | 0 |
| Q24562 | Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af50 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1F260 | RRM domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F1570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27761 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018258 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37904, Sbi_jg6050 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006141 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00932, Sgl05886, Sgl06010 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001151, gene:ENSEOMG00000031108 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0008450, CQ.Regalona.r1.3BG0008620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30239540 |
| Apiaceae | Apium graveolens | 2 | Ag10G02280, Ag9G01695 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001060, scaffold001442G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716253 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.157.V1.1, AsparagusV1_05.2860.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G11908 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33435.1, AT2G33440.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016212m.g.v1.0, Thhalv10016911m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g018230.2N, BniB08g021210.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g06410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00490 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG09.264, evm.TU.LG09.265, evm.TU.LG11.767 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022751 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08784 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.5240, BH01.4971, CH01.5573 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0232980 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0411360.1, HORVU.MOREX.r3.4HG0411370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070977 |
| Poaceae | Oryza coarctata | 2 | Oco05G002380, Oco06G002320 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g72650.1, LOC_Os03g04520.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G487800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100173, Pt_Chr0100298 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G037780, Chr04G004960, Chr07G006620, Chr12G001660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G553400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG056670, gene_TRIDC5AG072420 |
| Poaceae | Zea mays | 1 | Zm00001eb402770_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4463 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1404 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g16310 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1300 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1619 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1742 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2554 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.460 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001629 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6246 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1992 |
| Salicaceae | Populus euphratica | 1 | populus_peu21573 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610403 |
| Solanaceae | Solanum chilense | 1 | SOLCI002666100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031347 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12579 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1739 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25940.v3.1, Zosma04g25950.v3.1 |