Basic Information
Locus ID:
AsparagusV1_04.138.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3380499 | 3403949 | + | AsparagusV1_04.138.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 65,442.96 Da | 46.61 | 84.22 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 87 | 125 | 5.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 84 | 150 | 1.57E-7 | IPR036047 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 490 | 546 | 4.2E-6 | IPR015422 |
| Gene3D | G3DSA:1.20.1280.50 | - | 88 | 127 | 2.5E-6 | - |
| SMART | SM00256 | fbox_2 | 91 | 131 | 0.0017 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01120.1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein. encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome. | 0 |
| RefSeq | XP_020259854.1 | uncharacterized protein LOC109836382 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1EZ73 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F1380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.137.V1.1, AsparagusV1_04.138.V1.1 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12960 |