Basic Information
Locus ID:
AsparagusV1_04.137.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3366908 | 3373096 | + | AsparagusV1_04.137.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 65,959.75 Da | 47.44 | 76.29 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 104 | 142 | 3.9E-6 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 489 | 552 | 3.7E-7 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 103 | 179 | 4.32E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 105 | 144 | 4.0E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 102 | 148 | 8.676143 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 335 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020259853.1 | uncharacterized protein LOC109836380 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1EXX1 | F-box domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F1370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.137.V1.1, AsparagusV1_04.138.V1.1 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12960 |